Tag: gis

Store and visualize your raster in the Cloud with COG and QGIS

We have recently been working for the French Space Agency ( CNES ) who needed to store and visualize satellite rasters in a cloud platform. They want to access the image raw data, with no transformation, in order to fullfill deep analysis like instrument calibration. Using classic cartographic server standard like WMS or TMS is not an option because those services transform datasets in already rendered tiles.

We chose to use a quite recent format managed by GDAL, the COG (Cloud Optimize Geotiff) and target OVH cloud platform for it provides OpenStack, a open source cloud computing platform.

How it works

A COG file is a GEOTiff file which inner structure is tiled, meaning that the whole picture is divided in fixed size tile (256 x 256 pixels for instance) so you can efficiently retrieve parts of the raster. In addition to the HTTP/1.1 standard feature range request, it is possible to get specific tiles of an image through the network without downloading the entire raster.

We used a service provided by OpenStack, called Object Storage to serve the COG imagery. Object storage allows to store and retrieve file as objects using HTTP GET/POST requests.

Why not WCS ?

Web Coverage Service standard could have been an option. A WCS server can serve raw data according to a given geographic extent. It’s completely possible to deploy a container or a VPS (Virtual Private Server) running a WCS Server in a cloud plateform. The main advantages of the COG solution over WCS Server is that you don’t have to deal with the burden of deploying a server, like giving it ressources, configuring load balancing, handle updates, etc…

The beauty of COG solution is its simplicity. It is only HTTP requests, and everything else (rendering for instance) is done on the client side.

Step by step

Here are the different steps you’d have to go through if you’re willing to navigate in a big raster image directly from the cloud.

First, let’s generate a COG file

gdal_translate inputfile.tif cogfile.tif -co TILED=YES -co COPY_SRC_OVERVIEWS=YES -co COMPRESS=DEFLATE

Install your openstack-client, it can be achieved easily with Python pip install command line

$ pip install python-openstackclient

Next, configure your openstack client in order to generate an athentification token. To do so you need to download your project specific openrc file to setup your environment)

$ source myproject-openrc.sh
Please enter your OpenStack Password for project myproject as user myuser:
**********
$ openstack token issue                                 
+------------+-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| Field      | Value                                                                                                                                                                                   |
+------------+-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| expires    | 2020-07-21T08:15:12+0000                                                                                                                                                                |
| id         | xxxx_my_token_xxxx
| project_id | 97e2e750f1904b41b76f80a50dabde0a                                                                                                                                                        |
| user_id    | 18f7ccaf1a2d4344a4e35f0d84eb065e                                                                                                                                                        |
+------------+-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+

You are now good to push you COG file to the cloud instance

openstack object create MyContainer cogfile.tif --name cogfile.tif

Before starting QGIS, 2 environment variables need to be set.  (replace xxxx_my_token_xxxx with the token you’d just come to generate)

$ export SWIFT_AUTH_TOKEN=xxxx_my_token_xxxx
$ export SWIFT_STORAGE_URL=https://storage.sbg.cloud.ovh.net/v1/AUTH_$OS_PROJECT_ID

It can also be done directly from the QGIS Python console by setting those variable using the os.environ.

Finally, add a cloud raster data source in in QGIS

You can now navigating into your image directly reading it from the cloud

© CNES 2018, Distribution Airbus DS

Performances

While panning in the map, QGIS will download only few tiles from the image in order to cover the view extent. The display latency that you could see in the video depends essentially on:

  • The number of band of your image
  • The pixel size
  • Your internet connection (mine, the one use for the video, is not an awesome one)

Note that the white flickering that you could see when you move in the map and the raster is refreshed should be removed in next version of QGIS according to this QEP.

What’s next ?

Thanks so much to the GDAL and QGIS contributors for adding such a nice feature ! It brings lots of possibilities for organizations that have to deal with great number of big raster and just want to explore part of it.

We are already thinking about further improvments (ease authentification, better integration with processing…), so if you’re willing to fund them or just want to know more about QGIS, feel free to contact us at infos+data@oslandia.com. And please have a look at our support offering for QGIS.

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Publication de l’extension COVADIS RAPEA pour QWAT et QGEP

QWAT est une application open source de gestion des réseaux d’eau potable émanant des collectivités de Pully, le SIGE à Vevey, Morges et Lausanne.
QGEP est son homologue dédiée à la gestion des eaux usées et pluviales, initiée par le groupe utilisateur QGIS Suisse.

L’échange de données entre institutions est une pierre angulaire des politiques de l’eau. Ces échanges se basent sur des formats d’échanges standardisés. Ainsi les Cantons de Fribourg (format aquaFRI) ou de Vaud (format SIRE) conditionnent certaines subventions publiques à la transmission des données selon des formats pré-définis et permettent à ces échelons administratifs d’avoir une vision globale des réseaux humides.

Dans le cadre d’une expérimentation des outils QWAT (eau potable) et QGEP (eaux usées), Charentes Eaux a souhaité mettre en œuvre des extensions dédiées au standard d’échange de données sur les réseaux d’eau Français, le Géostandard Réseaux d’adduction d’eau potable et d’assainissement (RAEPA) défini par la Commission de validation des données pour l’information spatialisée (COVADIS).

Oslandia a été mandaté pour mettre en œuvre des instances de QWAT et QGEP, réaliser les extensions RAEPA pour chacun de ces outils, et aider Charente Eaux à charger les données des collectivités membres de ce syndicat mixte.

https://charente-eaux.fr/le-syndicat/qui-sommes-nous/

Le travail a été publié pour QWAT sous forme d’une extension standardisée dans le dépôt l’organisation QWAT https://github.com/qwat/extension_fr_raepa/

Pour QGEP, il n’existe pas encore de fonctionnalité pour gérer d’extension, le dépôt https://gitlab.com/Oslandia/qgep_extension_raepa/ contient donc les définitions de données et de vues à rajouter manuellement au modèle de données.

La compatibilité des modèles de données a été évaluée et le choix a été fait de ne faire que des vues dédiées à l’export de données. Il est techniquement possible de faire des vues éditables pour permettre le chargement de données via ces vues depuis des fichiers suivant le gabarit de données RAEPA. Le niveau de simplification et d’agrégation des listes de valeurs rend ce travail peu générique dans l’état actuel du géostandard (v1.1), il est donc plus pertinent à ce stade de réaliser des scripts de chargement sans passer par ce pivot dans le cas de Charente-Eaux

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QGIS Snapping improvements

A few months ago, we proposed to the QGIS grant program to make improvements to the snap cache in QGIS. The community vote selected our project which was funded by QGIS.org. Developments are now mostly finished.

In short, snapping is crucial for editing geospatial features. It is the only way to ensuring they are topologically related, ie, connected vertices have exactly the same coordinates even if manual digitizing on screen is imprecise by nature.  Snapping correctly supposes QGIS have in memory an indexed cache of the geometries to snap to. And maintainting this cache when data is modified, sometimes by another user or database logic, can be a real challenge. This it exactly what this work adresses.

The proposal was divided into two different tasks:

  • Manage circular dependencies
  • Relax the snap cache index build

Manage cicular data dependencies

Data dependencies

Data dependency is an existing feature that allows you to configure QGIS to reload layers (and their snapping cache) when a layer is modified.

It is useful when you store your data in a database and you set up triggers to maintain consistency between the different tables of your data model.

For instance, say you have topological informations containing lines and nodes. Nodes are part of lines and lines go through nodes. Then, you move a node in QGIS, and save your modifications to the database. In order to keep the data consistent, a trigger updates the geometry of the line going through the modified node.

Node 2 is modified, Line 1 is updated accordingly

QGIS, as a database client, has no information that the line layer currently displayed in the canvas needs to be refreshed after the trigger. Although the map canvas will be up to date, because QGIS fetches data for display without any caching system, the snapping cache is not and you’ll end up with ghost snapping highlights issues.

Snapping highlights (light red) differ from real line (orange)

Defining a dependency between nodes and lines layers tells QGIS that it has to refresh the line layer when a node is modified.

Dependencies configuration: Lines layer will be refreshed whenever Nodes layer is modified

It also have to work the other way, modifying a line should update the nodes to ensure they still are on the line.

Circular data dependencies

So here we are, lines depend on nodes which depend on lines which depend on nodes which…

That’s what circular dependencies is about. This specific behavior was previously forbidden and needed a special way to deal with it. Thanks to this recent development, it is now possible.

It’s also possible to add the layer itself as one of its own dependencies. It helps dealing with specific cases where one feature modification could lead to a modification of another feature in the same layer (to keep consistency on road networks for instance).

Road 2 is modified, Road 1 is updated accordingly

This feature is available in the next QGIS LTR version 3.10.

Relax the snapping cache index build

If you work in QGIS with huge projects displaying a lot of vector data, and you enable snapping while editing these data, you probably already met this dialog:

Snap indexing dialog

This dialog informs you that data are currently being indexed so you can snap on them while you will edit feature geometry. And for big projects, this dialog can last for a really long time. Let’s work on speeding it up!

What’s a snap index?

Let’s say you want to move a line and snap it onto another one. While you drag your line with the mouse, QGIS will look for an existing geometry beneath the mouse cursor (with a certain pixel tolerance) every time you move your mouse. Without spatial index, QGIS will have to go through every geometry in your layer to check if the given geometry is beneath the cursor position. This would be very ineffective.

In order to prevent this, QGIS keeps an index where vector data are stored in a way that it can quickly find out what geometry is beneath the mouse cursor. The building of this data structure takes time and that is what the progress dialog is about.

Firstly: Parallelize snap index build

If you want to be able to snap on all layers in your project, then QGIS will have to build one snap index for each layer. This operation was made sequentially meaning that if you have for instance 20 layers and the index building last approximatively 3 seconds for each, then the whole index building will last 1 minute. We made modifications to QGIS so that index building could be done in parallel. As a result, the total index building time could theoretically be 3 seconds!

4 layers snap index being built in parallel

However, parallel operations are limited by the number of CPU cores of your machine, meaning that if you have 4 cores (core i7 for instance) then the total time will be up to 4 times faster than when the building is sequential (and last 15 seconds in our example).

Secondly: relax the snap build

For big projects, parallelizing index building is not enough and still takes too much time. Futhermore, to reduce snap index building, an existing optimisation was to build the spatial index for a specific area of interest (determined according to the displayed area and layer size). As a consequence, when you’ve done waiting for an index currently building and you move the map or zoom in/out, you could possibly trigger another snap index building and wait again.

So, the idea was to avoid waiting at all. Snap index is now built whenever it needs to (when you first enable snapping, when you move or zoom) but the user doesn’t have to wait for the build to be over and can continue what it was doing (creating feature, moving…). Snapping highlights will be missing when the index is currently being built and will appear gradually as soon as they finished. That’s what we call the relaxing mode.

No waiting dialog, snapping highlights appears as soon as snap index is ready

This feature has been merged into current QGIS master and will be present in future QGIS 3.12 release. We keep working on this feature in order to make it more stable and efficient.

What’s next

We’ll continue to improve this feature in the coming days, if you have the chance to test it and encounter issues please let us know on the QGIS tracker. If you think about a missing feature or just want to know more about QGIS, feel free to contact us at infos+data@oslandia.com. And please have a look at our support offering for QGIS.

Many thanks to QGIS grant program for funding these new features. Thanks also to all the people involved in reviewing the code and helping to better understand the existing mechanism.

 

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QGIS Versioning now supports foreign keys!

QGIS-versioning is a QGIS and PostGIS plugin dedicated to data versioning and history management. It supports :

  • Keeping full table history with all modifications
  • Transparent access to current data
  • Versioning tables with branches
  • Work offline
  • Work on a data subset
  • Conflict management with a GUI

QGIS versioning conflict management

In a previous blog article we detailed how QGIS versioning can manage data history, branches, and work offline with PostGIS-stored data and QGIS. We recently added foreign key support to QGIS versioning so you can now historize any complex database schema.

This QGIS plugin is available in the official QGIS plugin repository, and you can fork it on GitHub too !

Foreign key support

TL;DR

When a user decides to historize its PostgreSQL database with QGIS-versioning, the plugin alters the existing database schema and adds new fields in order to track down the different versions of a single table row. Every access to these versioned tables are subsequently made through updatable views in order to automatically fill in the new versioning fields.

Up to now, it was not possible to deal with primary keys and foreign keys : the original tables had to be constraints-free.  This limitation has been lifted thanks to this contribution.

To make it simple, the solution is to remove all constraints from the original database and transform them into a set of SQL check triggers installed on the working copy databases (SQLite or PostgreSQL). As verifications are made on the client side, it’s impossible to propagate invalid modifications on your base server when you “commit” updates.

Behind the curtains

When you choose to historize an existing database, a few fields are added to the existing table. Among these fields, versioning_ididentifies  one specific version of a row. For one existing row, there are several versions of this row, each with a different versioning_id but with the same original primary key field. As a consequence, that field cannot satisfy the unique constraint, so it cannot be a key, therefore no foreign key neither.

We therefore have to drop the primary key and foreign key constraints when historizing the table. Before removing them, constraints definitions are stored in a dedicated table so that these constraints can be checked later.

When the user checks out a specific table on a specific branch, QGIS-versioning uses that constraint table to build constraint checking triggers in the working copy. The way constraints are built depends on the checkout type (you can checkout in a SQLite file, in the master PostgreSQL database or in another PostgreSQL database).

What do we check ?

That’s where the fun begins ! The first thing we have to check is key uniqueness or foreign key referencing an existing key on insert or update. Remember that there are no primary key and foreign key anymore, we dropped them when activating historization. We keep the term for better understanding.

You also have to deal with deleting or updating a referenced row and the different ways of propagating the modification : cascade, set default, set null, or simply failure, as explained in PostgreSQL Foreign keys documentation .

Nevermind all that, this problem has been solved for you and everything is done automatically in QGIS-versioning. Before you ask, yes foreign keys spanning on multiple fields are also supported.

What’s new in QGIS ?

You will get a new message you probably already know about, when you try to make an invalid modification committing your changes to the master database

Error when foreign key constraint is violated

Partial checkout

One existing Qgis-versioning feature is partial checkout. It allows a user to select a subset of data to checkout in its working copy. It avoids downloading gigabytes of data you do not care about. You can, for instance, checkout features within a given spatial extent.

So far, so good. But if you have only a part of your data, you cannot ensure that modifying a data field as primary key will keep uniqueness. In this particular case, QGIS-versioning will trigger errors on commit, pointing out the invalid rows you have to modify so the unique constraint remains valid.

Error when committing non unique key after a partial checkout

Tests

There is a lot to check when you intend to replace the existing constraint system with your own constraint system based on triggers. In order to ensure QGIS-Versioning stability and reliability, we put some special effort on building a test set that cover all use cases and possible exceptions.

What’s next

There is now no known limitations on using QGIS-versioning on any of your database. If you think about a missing feature or just want to know more about QGIS and QGIS-versioning, feel free to contact us at infos+data@oslandia.com. And please have a look at our support offering for QGIS.

Many thanks to eHealth Africa who helped us develop these new features. eHealth Africa is a non-governmental organization based in Nigeria. Their mission is to build stronger health systems through the design and implementation of data-driven solutions.

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Create a QGIS vector data provider in Python is now possible

 

Why python data providers?

My main reasons for having Python data provider were:

  • quick prototyping
  • web services
  • why not?

 

This topic has been floating in my head for a while since I decided to give it a second look and I finally implemented it and merged for the next 3.2 release.

 

How it’s been done

To make this possible I had to:

  • create a public API for registering the providers
  • create the Python bindings (the hard part)
  • create a sample Python vector data provider (the boring part)
  • make all the tests pass

 

First, let me say that it wasn’t like a walk in the park: the Python bindings part is always like diving into woodoo and black magic recipes before I can get it to work properly.

For the Python provider sample implementation I decided to re-implement the memory (aka: scratch layers) provider because that’s one of the simplest providers and it does not depend on any external storage or backend.

 

How to and examples

For now, the main source of information is the API and the tests:

To register your own provider (PyProvider in the snippet below) these are the basic steps:

metadata = QgsProviderMetadata(PyProvider.providerKey(), PyProvider.description(), PyProvider.createProvider)
QgsProviderRegistry.instance().registerProvider(metadata)

To create your own provider you will need at least the following components:

  • the provider class itself (subclass of QgsVectorDataProvider)
  • a feature source (subclass of QgsAbstractFeatureSource)
  • a feature iterator (subclass of QgsAbstractFeatureIterator)

Be aware that the implementation of a data provider is not easy and you will need to write a lot of code, but at least you could get some inspiration from the existing example.

 

Enjoy wirting data providers in Python and please let me know if you’ve fond this implementation useful!

The post Create a QGIS vector data provider in Python is now possible first appeared on Open Web Solutions, GIS & Python Development.

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Welcome QGIS 3 and bye bye Madeira

Last week I’ve been in Madeira at the hackfest, like all the past events this has been an amazing happening, for those of you who have never been there, a QGIS hackfest is typically an event where QGIS developers and other pasionate contributors like documentation writers, translators etc. gather together to discuss the future of their beloved QGIS software. QGIS hackfest are informal events where meetings are scheduled freely and any topic relevant to the project can be discussed. This time we have brought to the table some interesting topics like:
  • the future of processing providers: should they be part of QGIS code or handled independently as plugins?
  • the road forward to a better bug reporting system and CI platform: move to gitlab?
  • the certification program for QGIS training courses: how (and how much) training companies should give back to the project?
  • SWOT analysis of current QGIS project: very interesting discussion about the status of the project.
  • QGIS Qt Quick modules for mobile QGIS app
Tehre were also some mentoring sessions where I presented:
  • How to set up a development environment and make your first pull request
  • How to write tests for QGIS (in both python and C++)
  At this link you can find all the video recordings of the sessions: https://github.com/qgis/QGIS/wiki/DeveloperMeetingMadeira2018   Here is a link to the Vagrant QGIS developer VM I’ve prepared for the session: https://github.com/elpaso/qgis-dev-vagrant/   I’ve got a good feedback from other devs about my sessions and I’m really happy that somebody found them useful, one of the main goals of a QGIS hackfest should really be to help other developers to ramp up quicly into the project. Other than that, I’ve also find the time to update to QGIS 3.0 some of my old plugins like GeoCoding and QuickWKT.   Thanks to Giovanni Manghi and to Madeira Government for the organizazion and thanks to all QGIS sponsors and donors!   About me: I started as a QGIS plugin author, continued as the developer of the plugin official repository at https://plugins.qgis.org and now I’m one of the top 5 QGIS core contributors. After almost 10 years that I’m in the QGIS project I’m now not only a proud member of the QGIS community but also an advocate for the open source GIS software movement.

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Building QGIS master with Qt 5.9.3 debug build

Building QGIS from sources is not hard at all on a recent linux box, but what about if you wanted to be able to step-debug into Qt core or if you wanted to build QGIS agains the latest Qt release? Here things become tricky. This short post is about my experiments to build Qt and and other Qt-based dependencies for QGIS in order to get a complete debugger-friendly build of QGIS.   Start with downloading the latest Qt installer from Qt official website: https://www.qt.io/download-qt-for-application-development choose the Open Source version.   Now install the Qt version you want to build, make sure you check the Sources and the components you might need. Whe you are done with that, you’ll have your sources in a location like /home/user/Qt/5.9.3/Src/ To build the sources, you can change into that directory and issue the following command – I assume that you have already installed all the dependencies normally needed to build C++ Qt programs – I’m using clang here but feel free to choose gcc, we are going to install the new Qt build into /opt/qt593.
./configure -prefix /opt/qt593 -debug -opensource -confirm-license -ccache -platform linux-clang
When done, you can build it with
make -j9
sudo make install
  To build QGIS you also need three additional Qt packages   QtWebKit from https://github.com/qt/qtwebkit (you can just download the zip): Extract it somewhere and build it with
/opt/qt593/bin/qmake WebKit.pro
make -j9
sudo make install
  Same with QScintila2 from https://www.riverbankcomputing.com/software/qscintilla
/opt/qt593/bin/qmake qscintilla.pro
make -j9
sudo make install
  QWT is also needed and it can be downloaded from https://sourceforge.net/projects/qwt/files/qwt/6.1.3/ but it requires a small edit in qwtconfig.pri before you can build it: set QWT_INSTALL_PREFIX = /opt/qt593_libs/qwt-6.1.3 to install it in a different folder than the default one (that would possibly overwrite a system install of QWT). The build it with:
/opt/qt593/bin/qmake qwt.pro
make -j9
sudo make install
  If everything went fine, you can now configure Qt Creator to use this new debug build of Qt: start with creating a new kit (you can probably clone a working Qt5 kit if you have one). What you need to change is the Qt version (the path to cmake) to point to your brand new Qt build,: Pick up a name and choose the Qt version, but before doing that you need to click on Manage… to create a new one: Now you should be able to build QGIS using your new Qt build, just make sure you disable the bindings in the CMake configuration: unfortunately you’d also need to build PyQt in order to create the bindings.   Whe QGIS is built using this debug-enabled Qt, you will be able to step-debug into Qt core libraries! Happy debugging!  

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Essen 2017 QGIS Hackfest

Another great QGIS hackfest is gone, and it’s time for a quick report. The location was the Linux Hotel, one of the best places where open source developers could meet, friendly, geek-oriented and when the weather is good, like this time, villa Vogelsang is a wonderful place to have a beer in the garden while talking about software development or life in general. This is a short list of what kept me busy during the hackfest:
  • fixed some bugs and feature requests on the official QGIS plugin repo that I’m maintaining since the very beginning
  • make the QGIS official plugin repository website mobile-friendly
  • QGIS Server Python Plugin API refactoring, I’ve completed the work on the new API, thanks to the ongoing server refactoring it’s now much cleaner than it was in the first version
  • attribute table bugs: I started to address some nasty bugs in the attribute table, some of those were fixed during the week right after the hackfest
  • unified add layer button, we had a productive meeting where we decided the path forward to implement this feature, thanks to Boundless that is funding the development, this feature is what’s I’m currently working on these days
Thanks to all QGIS donors and funders that made yet another great hackfest possible and in particular to Boundless Spatial Inc. for funding my personal expenses.    

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